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| <div class="subTitle">org.apache.commons.math3.genetics</div> |
| <h2 title="Class CycleCrossover" class="title">Class CycleCrossover<T></h2> |
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| <li> |
| <ul class="inheritance"> |
| <li>org.apache.commons.math3.genetics.CycleCrossover<T></li> |
| </ul> |
| </li> |
| </ul> |
| <div class="description"> |
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| <dl><dt><span class="strong">Type Parameters:</span></dt><dd><code>T</code> - generic type of the <a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics"><code>AbstractListChromosome</code></a>s for crossover</dd></dl> |
| <dl> |
| <dt>All Implemented Interfaces:</dt> |
| <dd><a href="../../../../../org/apache/commons/math3/genetics/CrossoverPolicy.html" title="interface in org.apache.commons.math3.genetics">CrossoverPolicy</a></dd> |
| </dl> |
| <hr> |
| <br> |
| <pre>public class <span class="strong">CycleCrossover<T></span> |
| extends <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</a> |
| implements <a href="../../../../../org/apache/commons/math3/genetics/CrossoverPolicy.html" title="interface in org.apache.commons.math3.genetics">CrossoverPolicy</a></pre> |
| <div class="block">Cycle Crossover [CX] builds offspring from <b>ordered</b> chromosomes by identifying cycles |
| between two parent chromosomes. To form the children, the cycles are copied from the |
| respective parents. |
| <p> |
| To form a cycle the following procedure is applied: |
| <ol> |
| <li>start with the first gene of parent 1</li> |
| <li>look at the gene at the same position of parent 2</li> |
| <li>go to the position with the same gene in parent 1</li> |
| <li>add this gene index to the cycle</li> |
| <li>repeat the steps 2-5 until we arrive at the starting gene of this cycle</li> |
| </ol> |
| The indices that form a cycle are then used to form the children in alternating order, i.e. |
| in cycle 1, the genes of parent 1 are copied to child 1, while in cycle 2 the genes of parent 1 |
| are copied to child 2, and so forth ... |
| </p> |
| |
| Example (zero-start cycle): |
| <pre> |
| p1 = (8 4 7 3 6 2 5 1 9 0) X c1 = (8 1 2 3 4 5 6 7 9 0) |
| p2 = (0 1 2 3 4 5 6 7 8 9) X c2 = (0 4 7 3 6 2 5 1 8 9) |
| |
| cycle 1: 8 0 9 |
| cycle 2: 4 1 7 2 5 6 |
| cycle 3: 3 |
| </pre> |
| |
| This policy works only on <a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics"><code>AbstractListChromosome</code></a>, and therefore it |
| is parameterized by T. Moreover, the chromosomes must have same lengths.</div> |
| <dl><dt><span class="strong">Since:</span></dt> |
| <dd>3.1</dd> |
| <dt><span class="strong">Version:</span></dt> |
| <dd>$Id: CycleCrossover.java 1385297 2012-09-16 16:05:57Z tn $</dd> |
| <dt><span class="strong">See Also:</span></dt><dd><a href="http://www.rubicite.com/Tutorials/GeneticAlgorithms/CrossoverOperators/CycleCrossoverOperator.aspx"> |
| Cycle Crossover Operator</a></dd></dl> |
| </li> |
| </ul> |
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| <th class="colOne" scope="col">Constructor and Description</th> |
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| <td class="colOne"><code><strong><a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#CycleCrossover()">CycleCrossover</a></strong>()</code> |
| <div class="block">Creates a new <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="class in org.apache.commons.math3.genetics"><code>CycleCrossover</code></a> policy.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colOne"><code><strong><a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#CycleCrossover(boolean)">CycleCrossover</a></strong>(boolean randomStart)</code> |
| <div class="block">Creates a new <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="class in org.apache.commons.math3.genetics"><code>CycleCrossover</code></a> policy using the given <code>randomStart</code> behavior.</div> |
| </td> |
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| <td class="colFirst"><code><a href="../../../../../org/apache/commons/math3/genetics/ChromosomePair.html" title="class in org.apache.commons.math3.genetics">ChromosomePair</a></code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#crossover(org.apache.commons.math3.genetics.Chromosome, org.apache.commons.math3.genetics.Chromosome)">crossover</a></strong>(<a href="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</a> first, |
| <a href="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</a> second)</code> |
| <div class="block">Perform a crossover operation on the given chromosomes.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colFirst"><code>boolean</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#isRandomStart()">isRandomStart</a></strong>()</code> |
| <div class="block">Returns whether the starting index is chosen randomly or set to zero.</div> |
| </td> |
| </tr> |
| <tr class="altColor"> |
| <td class="colFirst"><code>protected <a href="../../../../../org/apache/commons/math3/genetics/ChromosomePair.html" title="class in org.apache.commons.math3.genetics">ChromosomePair</a></code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#mate(org.apache.commons.math3.genetics.AbstractListChromosome, org.apache.commons.math3.genetics.AbstractListChromosome)">mate</a></strong>(<a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</a><<a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="type parameter in CycleCrossover">T</a>> first, |
| <a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</a><<a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="type parameter in CycleCrossover">T</a>> second)</code> |
| <div class="block">Helper for <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#crossover(org.apache.commons.math3.genetics.Chromosome, org.apache.commons.math3.genetics.Chromosome)"><code>crossover(Chromosome, Chromosome)</code></a>.</div> |
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| <code><a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#clone()" title="class or interface in java.lang">clone</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</a></code></li> |
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| <!-- ========= CONSTRUCTOR DETAIL ======== --> |
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| <li class="blockList"><a name="constructor_detail"> |
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| </a> |
| <h3>Constructor Detail</h3> |
| <a name="CycleCrossover()"> |
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| </a> |
| <ul class="blockList"> |
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| <h4>CycleCrossover</h4> |
| <pre>public CycleCrossover()</pre> |
| <div class="block">Creates a new <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="class in org.apache.commons.math3.genetics"><code>CycleCrossover</code></a> policy.</div> |
| </li> |
| </ul> |
| <a name="CycleCrossover(boolean)"> |
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| <ul class="blockListLast"> |
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| <h4>CycleCrossover</h4> |
| <pre>public CycleCrossover(boolean randomStart)</pre> |
| <div class="block">Creates a new <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="class in org.apache.commons.math3.genetics"><code>CycleCrossover</code></a> policy using the given <code>randomStart</code> behavior.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>randomStart</code> - whether the start index shall be chosen randomly or be set to 0</dd></dl> |
| </li> |
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| <h4>isRandomStart</h4> |
| <pre>public boolean isRandomStart()</pre> |
| <div class="block">Returns whether the starting index is chosen randomly or set to zero.</div> |
| <dl><dt><span class="strong">Returns:</span></dt><dd><code>true</code> if the starting index is chosen randomly, <code>false</code> otherwise</dd></dl> |
| </li> |
| </ul> |
| <a name="crossover(org.apache.commons.math3.genetics.Chromosome, org.apache.commons.math3.genetics.Chromosome)"> |
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| <h4>crossover</h4> |
| <pre>public <a href="../../../../../org/apache/commons/math3/genetics/ChromosomePair.html" title="class in org.apache.commons.math3.genetics">ChromosomePair</a> crossover(<a href="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</a> first, |
| <a href="../../../../../org/apache/commons/math3/genetics/Chromosome.html" title="class in org.apache.commons.math3.genetics">Chromosome</a> second) |
| throws <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a>, |
| <a href="../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html" title="class in org.apache.commons.math3.exception">MathIllegalArgumentException</a></pre> |
| <div class="block">Perform a crossover operation on the given chromosomes.</div> |
| <dl> |
| <dt><strong>Specified by:</strong></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/genetics/CrossoverPolicy.html#crossover(org.apache.commons.math3.genetics.Chromosome, org.apache.commons.math3.genetics.Chromosome)">crossover</a></code> in interface <code><a href="../../../../../org/apache/commons/math3/genetics/CrossoverPolicy.html" title="interface in org.apache.commons.math3.genetics">CrossoverPolicy</a></code></dd> |
| <dt><span class="strong">Parameters:</span></dt><dd><code>first</code> - the first chromosome.</dd><dd><code>second</code> - the second chromosome.</dd> |
| <dt><span class="strong">Returns:</span></dt><dd>the pair of new chromosomes that resulted from the crossover.</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/MathIllegalArgumentException.html" title="class in org.apache.commons.math3.exception">MathIllegalArgumentException</a></code> - if the chromosomes are not an instance of <a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics"><code>AbstractListChromosome</code></a></dd> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the length of the two chromosomes is different</dd></dl> |
| </li> |
| </ul> |
| <a name="mate(org.apache.commons.math3.genetics.AbstractListChromosome, org.apache.commons.math3.genetics.AbstractListChromosome)"> |
| <!-- --> |
| </a> |
| <ul class="blockListLast"> |
| <li class="blockList"> |
| <h4>mate</h4> |
| <pre>protected <a href="../../../../../org/apache/commons/math3/genetics/ChromosomePair.html" title="class in org.apache.commons.math3.genetics">ChromosomePair</a> mate(<a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</a><<a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="type parameter in CycleCrossover">T</a>> first, |
| <a href="../../../../../org/apache/commons/math3/genetics/AbstractListChromosome.html" title="class in org.apache.commons.math3.genetics">AbstractListChromosome</a><<a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html" title="type parameter in CycleCrossover">T</a>> second) |
| throws <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></pre> |
| <div class="block">Helper for <a href="../../../../../org/apache/commons/math3/genetics/CycleCrossover.html#crossover(org.apache.commons.math3.genetics.Chromosome, org.apache.commons.math3.genetics.Chromosome)"><code>crossover(Chromosome, Chromosome)</code></a>. Performs the actual crossover.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>first</code> - the first chromosome</dd><dd><code>second</code> - the second chromosome</dd> |
| <dt><span class="strong">Returns:</span></dt><dd>the pair of new chromosomes that resulted from the crossover</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the length of the two chromosomes is different</dd></dl> |
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