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<div class="subTitle">org.apache.commons.math3.ml.neuralnet</div>
<h2 title="Class MapUtils" class="title">Class MapUtils</h2>
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<pre>public class <span class="strong">MapUtils</span>
extends <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</a></pre>
<div class="block">Utilities for network maps.</div>
<dl><dt><span class="strong">Since:</span></dt>
<dd>3.3</dd>
<dt><span class="strong">Version:</span></dt>
<dd>$Id: MapUtils.java 1566092 2014-02-08 18:48:29Z tn $</dd></dl>
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<caption><span>Methods</span><span class="tabEnd">&nbsp;</span></caption>
<tr>
<th class="colFirst" scope="col">Modifier and Type</th>
<th class="colLast" scope="col">Method and Description</th>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static int[][]</code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#computeHitHistogram(java.lang.Iterable, org.apache.commons.math3.ml.neuralnet.twod.NeuronSquareMesh2D, org.apache.commons.math3.ml.distance.DistanceMeasure)">computeHitHistogram</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/twod/NeuronSquareMesh2D.html" title="class in org.apache.commons.math3.ml.neuralnet.twod">NeuronSquareMesh2D</a>&nbsp;map,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Computes the "hit" histogram of a two-dimensional map.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static double</code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#computeQuantizationError(java.lang.Iterable, java.lang.Iterable, org.apache.commons.math3.ml.distance.DistanceMeasure)">computeQuantizationError</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Computes the quantization error.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static double</code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#computeTopographicError(java.lang.Iterable, org.apache.commons.math3.ml.neuralnet.Network, org.apache.commons.math3.ml.distance.DistanceMeasure)">computeTopographicError</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Network.html" title="class in org.apache.commons.math3.ml.neuralnet">Network</a>&nbsp;net,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Computes the topographic error.</div>
</td>
</tr>
<tr class="rowColor">
<td class="colFirst"><code>static double[][]</code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#computeU(org.apache.commons.math3.ml.neuralnet.twod.NeuronSquareMesh2D, org.apache.commons.math3.ml.distance.DistanceMeasure)">computeU</a></strong>(<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/twod/NeuronSquareMesh2D.html" title="class in org.apache.commons.math3.ml.neuralnet.twod">NeuronSquareMesh2D</a>&nbsp;map,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Computes the <a href="http://en.wikipedia.org/wiki/U-Matrix">
U-matrix</a> of a two-dimensional map.</div>
</td>
</tr>
<tr class="altColor">
<td class="colFirst"><code>static <a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a></code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#findBest(double[], java.lang.Iterable, org.apache.commons.math3.ml.distance.DistanceMeasure)">findBest</a></strong>(double[]&nbsp;features,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Finds the neuron that best matches the given features.</div>
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<tr class="rowColor">
<td class="colFirst"><code>static <a href="../../../../../../org/apache/commons/math3/util/Pair.html" title="class in org.apache.commons.math3.util">Pair</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>,<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;</code></td>
<td class="colLast"><code><strong><a href="../../../../../../org/apache/commons/math3/ml/neuralnet/MapUtils.html#findBestAndSecondBest(double[], java.lang.Iterable, org.apache.commons.math3.ml.distance.DistanceMeasure)">findBestAndSecondBest</a></strong>(double[]&nbsp;features,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</code>
<div class="block">Finds the two neurons that best match the given features.</div>
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<code><a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#clone()" title="class or interface in java.lang">clone</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#equals(java.lang.Object)" title="class or interface in java.lang">equals</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#finalize()" title="class or interface in java.lang">finalize</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#getClass()" title="class or interface in java.lang">getClass</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#hashCode()" title="class or interface in java.lang">hashCode</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notify()" title="class or interface in java.lang">notify</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#notifyAll()" title="class or interface in java.lang">notifyAll</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#toString()" title="class or interface in java.lang">toString</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait()" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long)" title="class or interface in java.lang">wait</a>, <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true#wait(long, int)" title="class or interface in java.lang">wait</a></code></li>
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<h4>findBest</h4>
<pre>public static&nbsp;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&nbsp;findBest(double[]&nbsp;features,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Finds the neuron that best matches the given features.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>features</code> - Data.</dd><dd><code>neurons</code> - List of neurons to scan. If the list is empty
<code>null</code> will be returned.</dd><dd><code>distance</code> - Distance function. The neuron's features are
passed as the first argument to <a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html#compute(double[], double[])"><code>DistanceMeasure.compute(double[],double[])</code></a>.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the neuron whose features are closest to the given data.</dd>
<dt><span class="strong">Throws:</span></dt>
<dd><code><a href="../../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the size of the input is not compatible with the neurons features
size.</dd></dl>
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<h4>findBestAndSecondBest</h4>
<pre>public static&nbsp;<a href="../../../../../../org/apache/commons/math3/util/Pair.html" title="class in org.apache.commons.math3.util">Pair</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>,<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;findBestAndSecondBest(double[]&nbsp;features,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Finds the two neurons that best match the given features.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>features</code> - Data.</dd><dd><code>neurons</code> - List of neurons to scan. If the list is empty
<code>null</code> will be returned.</dd><dd><code>distance</code> - Distance function. The neuron's features are
passed as the first argument to <a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html#compute(double[], double[])"><code>DistanceMeasure.compute(double[],double[])</code></a>.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the two neurons whose features are closest to the given data.</dd>
<dt><span class="strong">Throws:</span></dt>
<dd><code><a href="../../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the size of the input is not compatible with the neurons features
size.</dd></dl>
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<a name="computeU(org.apache.commons.math3.ml.neuralnet.twod.NeuronSquareMesh2D, org.apache.commons.math3.ml.distance.DistanceMeasure)">
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<h4>computeU</h4>
<pre>public static&nbsp;double[][]&nbsp;computeU(<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/twod/NeuronSquareMesh2D.html" title="class in org.apache.commons.math3.ml.neuralnet.twod">NeuronSquareMesh2D</a>&nbsp;map,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Computes the <a href="http://en.wikipedia.org/wiki/U-Matrix">
U-matrix</a> of a two-dimensional map.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>map</code> - Network.</dd><dd><code>distance</code> - Function to use for computing the average
distance from a neuron to its neighbours.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the matrix of average distances.</dd></dl>
</li>
</ul>
<a name="computeHitHistogram(java.lang.Iterable, org.apache.commons.math3.ml.neuralnet.twod.NeuronSquareMesh2D, org.apache.commons.math3.ml.distance.DistanceMeasure)">
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<h4>computeHitHistogram</h4>
<pre>public static&nbsp;int[][]&nbsp;computeHitHistogram(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/twod/NeuronSquareMesh2D.html" title="class in org.apache.commons.math3.ml.neuralnet.twod">NeuronSquareMesh2D</a>&nbsp;map,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Computes the "hit" histogram of a two-dimensional map.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>data</code> - Feature vectors.</dd><dd><code>map</code> - Network.</dd><dd><code>distance</code> - Function to use for determining the best matching unit.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the number of hits for each neuron in the map.</dd></dl>
</li>
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<h4>computeQuantizationError</h4>
<pre>public static&nbsp;double&nbsp;computeQuantizationError(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Neuron.html" title="class in org.apache.commons.math3.ml.neuralnet">Neuron</a>&gt;&nbsp;neurons,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Computes the quantization error.
The quantization error is the average distance between a feature vector
and its "best matching unit" (closest neuron).</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>data</code> - Feature vectors.</dd><dd><code>neurons</code> - List of neurons to scan.</dd><dd><code>distance</code> - Distance function.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the error.</dd>
<dt><span class="strong">Throws:</span></dt>
<dd><code><a href="../../../../../../org/apache/commons/math3/exception/NoDataException.html" title="class in org.apache.commons.math3.exception">NoDataException</a></code> - if <code>data</code> is empty.</dd></dl>
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<h4>computeTopographicError</h4>
<pre>public static&nbsp;double&nbsp;computeTopographicError(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Iterable.html?is-external=true" title="class or interface in java.lang">Iterable</a>&lt;double[]&gt;&nbsp;data,
<a href="../../../../../../org/apache/commons/math3/ml/neuralnet/Network.html" title="class in org.apache.commons.math3.ml.neuralnet">Network</a>&nbsp;net,
<a href="../../../../../../org/apache/commons/math3/ml/distance/DistanceMeasure.html" title="interface in org.apache.commons.math3.ml.distance">DistanceMeasure</a>&nbsp;distance)</pre>
<div class="block">Computes the topographic error.
The topographic error is the proportion of data for which first and
second best matching units are not adjacent in the map.</div>
<dl><dt><span class="strong">Parameters:</span></dt><dd><code>data</code> - Feature vectors.</dd><dd><code>net</code> - Network.</dd><dd><code>distance</code> - Distance function.</dd>
<dt><span class="strong">Returns:</span></dt><dd>the error.</dd>
<dt><span class="strong">Throws:</span></dt>
<dd><code><a href="../../../../../../org/apache/commons/math3/exception/NoDataException.html" title="class in org.apache.commons.math3.exception">NoDataException</a></code> - if <code>data</code> is empty.</dd></dl>
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