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| <div class="subTitle">org.apache.commons.math3.ode</div> |
| <h2 title="Class JacobianMatrices" class="title">Class JacobianMatrices</h2> |
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| <li>org.apache.commons.math3.ode.JacobianMatrices</li> |
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| <pre>public class <span class="strong">JacobianMatrices</span> |
| extends <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/Object.html?is-external=true" title="class or interface in java.lang">Object</a></pre> |
| <div class="block">This class defines a set of <a href="../../../../../org/apache/commons/math3/ode/SecondaryEquations.html" title="interface in org.apache.commons.math3.ode"><code>secondary equations</code></a> to |
| compute the Jacobian matrices with respect to the initial state vector and, if |
| any, to some parameters of the primary ODE set. |
| <p> |
| It is intended to be packed into an <a href="../../../../../org/apache/commons/math3/ode/ExpandableStatefulODE.html" title="class in org.apache.commons.math3.ode"><code>ExpandableStatefulODE</code></a> |
| in conjunction with a primary set of ODE, which may be: |
| <ul> |
| <li>a <a href="../../../../../org/apache/commons/math3/ode/FirstOrderDifferentialEquations.html" title="interface in org.apache.commons.math3.ode"><code>FirstOrderDifferentialEquations</code></a></li> |
| <li>a <a href="../../../../../org/apache/commons/math3/ode/MainStateJacobianProvider.html" title="interface in org.apache.commons.math3.ode"><code>MainStateJacobianProvider</code></a></li> |
| </ul> |
| In order to compute Jacobian matrices with respect to some parameters of the |
| primary ODE set, the following parameter Jacobian providers may be set: |
| <ul> |
| <li>a <a href="../../../../../org/apache/commons/math3/ode/ParameterJacobianProvider.html" title="interface in org.apache.commons.math3.ode"><code>ParameterJacobianProvider</code></a></li> |
| <li>a <a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode"><code>ParameterizedODE</code></a></li> |
| </ul> |
| </p></div> |
| <dl><dt><span class="strong">Since:</span></dt> |
| <dd>3.0</dd> |
| <dt><span class="strong">Version:</span></dt> |
| <dd>$Id: JacobianMatrices.java 1538354 2013-11-03 12:48:40Z tn $</dd> |
| <dt><span class="strong">See Also:</span></dt><dd><a href="../../../../../org/apache/commons/math3/ode/ExpandableStatefulODE.html" title="class in org.apache.commons.math3.ode"><code>ExpandableStatefulODE</code></a>, |
| <a href="../../../../../org/apache/commons/math3/ode/FirstOrderDifferentialEquations.html" title="interface in org.apache.commons.math3.ode"><code>FirstOrderDifferentialEquations</code></a>, |
| <a href="../../../../../org/apache/commons/math3/ode/MainStateJacobianProvider.html" title="interface in org.apache.commons.math3.ode"><code>MainStateJacobianProvider</code></a>, |
| <a href="../../../../../org/apache/commons/math3/ode/ParameterJacobianProvider.html" title="interface in org.apache.commons.math3.ode"><code>ParameterJacobianProvider</code></a>, |
| <a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode"><code>ParameterizedODE</code></a></dd></dl> |
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| <tr class="altColor"> |
| <td class="colFirst"><code>static class </code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.MismatchedEquations.html" title="class in org.apache.commons.math3.ode">JacobianMatrices.MismatchedEquations</a></strong></code> |
| <div class="block">Special exception for equations mismatch.</div> |
| </td> |
| </tr> |
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| <tr> |
| <th class="colOne" scope="col">Constructor and Description</th> |
| </tr> |
| <tr class="altColor"> |
| <td class="colOne"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#JacobianMatrices(org.apache.commons.math3.ode.FirstOrderDifferentialEquations, double[], java.lang.String...)">JacobianMatrices</a></strong>(<a href="../../../../../org/apache/commons/math3/ode/FirstOrderDifferentialEquations.html" title="interface in org.apache.commons.math3.ode">FirstOrderDifferentialEquations</a> fode, |
| double[] hY, |
| <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a>... parameters)</code> |
| <div class="block">Simple constructor for a secondary equations set computing Jacobian matrices.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colOne"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#JacobianMatrices(org.apache.commons.math3.ode.MainStateJacobianProvider, java.lang.String...)">JacobianMatrices</a></strong>(<a href="../../../../../org/apache/commons/math3/ode/MainStateJacobianProvider.html" title="interface in org.apache.commons.math3.ode">MainStateJacobianProvider</a> jode, |
| <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a>... parameters)</code> |
| <div class="block">Simple constructor for a secondary equations set computing Jacobian matrices.</div> |
| </td> |
| </tr> |
| </table> |
| </li> |
| </ul> |
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| <h3>Method Summary</h3> |
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| <caption><span>Methods</span><span class="tabEnd"> </span></caption> |
| <tr> |
| <th class="colFirst" scope="col">Modifier and Type</th> |
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| </tr> |
| <tr class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#addParameterJacobianProvider(org.apache.commons.math3.ode.ParameterJacobianProvider)">addParameterJacobianProvider</a></strong>(<a href="../../../../../org/apache/commons/math3/ode/ParameterJacobianProvider.html" title="interface in org.apache.commons.math3.ode">ParameterJacobianProvider</a> provider)</code> |
| <div class="block">Add a parameter Jacobian provider.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#getCurrentMainSetJacobian(double[][])">getCurrentMainSetJacobian</a></strong>(double[][] dYdY0)</code> |
| <div class="block">Get the current value of the Jacobian matrix with respect to state.</div> |
| </td> |
| </tr> |
| <tr class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#getCurrentParameterJacobian(java.lang.String, double[])">getCurrentParameterJacobian</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> pName, |
| double[] dYdP)</code> |
| <div class="block">Get the current value of the Jacobian matrix with respect to one parameter.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#registerVariationalEquations(org.apache.commons.math3.ode.ExpandableStatefulODE)">registerVariationalEquations</a></strong>(<a href="../../../../../org/apache/commons/math3/ode/ExpandableStatefulODE.html" title="class in org.apache.commons.math3.ode">ExpandableStatefulODE</a> expandable)</code> |
| <div class="block">Register the variational equations for the Jacobians matrices to the expandable set.</div> |
| </td> |
| </tr> |
| <tr class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#setInitialMainStateJacobian(double[][])">setInitialMainStateJacobian</a></strong>(double[][] dYdY0)</code> |
| <div class="block">Set the initial value of the Jacobian matrix with respect to state.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#setInitialParameterJacobian(java.lang.String, double[])">setInitialParameterJacobian</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> pName, |
| double[] dYdP)</code> |
| <div class="block">Set the initial value of a column of the Jacobian matrix with respect to one parameter.</div> |
| </td> |
| </tr> |
| <tr class="altColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#setParameterizedODE(org.apache.commons.math3.ode.ParameterizedODE)">setParameterizedODE</a></strong>(<a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode">ParameterizedODE</a> parameterizedOde)</code> |
| <div class="block">Set a parameter Jacobian provider.</div> |
| </td> |
| </tr> |
| <tr class="rowColor"> |
| <td class="colFirst"><code>void</code></td> |
| <td class="colLast"><code><strong><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.html#setParameterStep(java.lang.String, double)">setParameterStep</a></strong>(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> parameter, |
| double hP)</code> |
| <div class="block">Set the step associated to a parameter in order to compute by finite |
| difference the Jacobian matrix.</div> |
| </td> |
| </tr> |
| </table> |
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| <h3>Constructor Detail</h3> |
| <a name="JacobianMatrices(org.apache.commons.math3.ode.FirstOrderDifferentialEquations, double[], java.lang.String...)"> |
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| <ul class="blockList"> |
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| <h4>JacobianMatrices</h4> |
| <pre>public JacobianMatrices(<a href="../../../../../org/apache/commons/math3/ode/FirstOrderDifferentialEquations.html" title="interface in org.apache.commons.math3.ode">FirstOrderDifferentialEquations</a> fode, |
| double[] hY, |
| <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a>... parameters) |
| throws <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></pre> |
| <div class="block">Simple constructor for a secondary equations set computing Jacobian matrices. |
| <p> |
| Parameters must belong to the supported ones given by <a href="../../../../../org/apache/commons/math3/ode/Parameterizable.html#getParametersNames()"><code>Parameterizable.getParametersNames()</code></a>, so the primary set of differential |
| equations must be <a href="../../../../../org/apache/commons/math3/ode/Parameterizable.html" title="interface in org.apache.commons.math3.ode"><code>Parameterizable</code></a>. |
| </p> |
| <p>Note that each selection clears the previous selected parameters.</p></div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>fode</code> - the primary first order differential equations set to extend</dd><dd><code>hY</code> - step used for finite difference computation with respect to state vector</dd><dd><code>parameters</code> - parameters to consider for Jacobian matrices processing |
| (may be null if parameters Jacobians is not desired)</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if there is a dimension mismatch between |
| the steps array <code>hY</code> and the equation dimension</dd></dl> |
| </li> |
| </ul> |
| <a name="JacobianMatrices(org.apache.commons.math3.ode.MainStateJacobianProvider, java.lang.String...)"> |
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| <h4>JacobianMatrices</h4> |
| <pre>public JacobianMatrices(<a href="../../../../../org/apache/commons/math3/ode/MainStateJacobianProvider.html" title="interface in org.apache.commons.math3.ode">MainStateJacobianProvider</a> jode, |
| <a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a>... parameters)</pre> |
| <div class="block">Simple constructor for a secondary equations set computing Jacobian matrices. |
| <p> |
| Parameters must belong to the supported ones given by <a href="../../../../../org/apache/commons/math3/ode/Parameterizable.html#getParametersNames()"><code>Parameterizable.getParametersNames()</code></a>, so the primary set of differential |
| equations must be <a href="../../../../../org/apache/commons/math3/ode/Parameterizable.html" title="interface in org.apache.commons.math3.ode"><code>Parameterizable</code></a>. |
| </p> |
| <p>Note that each selection clears the previous selected parameters.</p></div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>jode</code> - the primary first order differential equations set to extend</dd><dd><code>parameters</code> - parameters to consider for Jacobian matrices processing |
| (may be null if parameters Jacobians is not desired)</dd></dl> |
| </li> |
| </ul> |
| </li> |
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| <h3>Method Detail</h3> |
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| <h4>registerVariationalEquations</h4> |
| <pre>public void registerVariationalEquations(<a href="../../../../../org/apache/commons/math3/ode/ExpandableStatefulODE.html" title="class in org.apache.commons.math3.ode">ExpandableStatefulODE</a> expandable) |
| throws <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a>, |
| <a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.MismatchedEquations.html" title="class in org.apache.commons.math3.ode">JacobianMatrices.MismatchedEquations</a></pre> |
| <div class="block">Register the variational equations for the Jacobians matrices to the expandable set.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>expandable</code> - expandable set into which variational equations should be registered</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the dimension of the partial state does not |
| match the selected equations set dimension</dd> |
| <dd><code><a href="../../../../../org/apache/commons/math3/ode/JacobianMatrices.MismatchedEquations.html" title="class in org.apache.commons.math3.ode">JacobianMatrices.MismatchedEquations</a></code> - if the primary set of the expandable set does |
| not match the one used to build the instance</dd><dt><span class="strong">See Also:</span></dt><dd><a href="../../../../../org/apache/commons/math3/ode/ExpandableStatefulODE.html#addSecondaryEquations(org.apache.commons.math3.ode.SecondaryEquations)"><code>ExpandableStatefulODE.addSecondaryEquations(SecondaryEquations)</code></a></dd></dl> |
| </li> |
| </ul> |
| <a name="addParameterJacobianProvider(org.apache.commons.math3.ode.ParameterJacobianProvider)"> |
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| <h4>addParameterJacobianProvider</h4> |
| <pre>public void addParameterJacobianProvider(<a href="../../../../../org/apache/commons/math3/ode/ParameterJacobianProvider.html" title="interface in org.apache.commons.math3.ode">ParameterJacobianProvider</a> provider)</pre> |
| <div class="block">Add a parameter Jacobian provider.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>provider</code> - the parameter Jacobian provider to compute exactly the parameter Jacobian matrix</dd></dl> |
| </li> |
| </ul> |
| <a name="setParameterizedODE(org.apache.commons.math3.ode.ParameterizedODE)"> |
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| <h4>setParameterizedODE</h4> |
| <pre>public void setParameterizedODE(<a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode">ParameterizedODE</a> parameterizedOde)</pre> |
| <div class="block">Set a parameter Jacobian provider.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>parameterizedOde</code> - the parameterized ODE to compute the parameter Jacobian matrix using finite differences</dd></dl> |
| </li> |
| </ul> |
| <a name="setParameterStep(java.lang.String, double)"> |
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| <h4>setParameterStep</h4> |
| <pre>public void setParameterStep(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> parameter, |
| double hP) |
| throws <a href="../../../../../org/apache/commons/math3/ode/UnknownParameterException.html" title="class in org.apache.commons.math3.ode">UnknownParameterException</a></pre> |
| <div class="block">Set the step associated to a parameter in order to compute by finite |
| difference the Jacobian matrix. |
| <p> |
| Needed if and only if the primary ODE set is a <a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode"><code>ParameterizedODE</code></a>. |
| </p> |
| <p> |
| Given a non zero parameter value pval for the parameter, a reasonable value |
| for such a step is <code>pval * FastMath.sqrt(Precision.EPSILON)</code>. |
| </p> |
| <p> |
| A zero value for such a step doesn't enable to compute the parameter Jacobian matrix. |
| </p></div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>parameter</code> - parameter to consider for Jacobian processing</dd><dd><code>hP</code> - step for Jacobian finite difference computation w.r.t. the specified parameter</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/ode/UnknownParameterException.html" title="class in org.apache.commons.math3.ode">UnknownParameterException</a></code> - if the parameter is not supported</dd><dt><span class="strong">See Also:</span></dt><dd><a href="../../../../../org/apache/commons/math3/ode/ParameterizedODE.html" title="interface in org.apache.commons.math3.ode"><code>ParameterizedODE</code></a></dd></dl> |
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| <h4>setInitialMainStateJacobian</h4> |
| <pre>public void setInitialMainStateJacobian(double[][] dYdY0) |
| throws <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></pre> |
| <div class="block">Set the initial value of the Jacobian matrix with respect to state. |
| <p> |
| If this method is not called, the initial value of the Jacobian |
| matrix with respect to state is set to identity. |
| </p></div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>dYdY0</code> - initial Jacobian matrix w.r.t. state</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if matrix dimensions are incorrect</dd></dl> |
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| <h4>setInitialParameterJacobian</h4> |
| <pre>public void setInitialParameterJacobian(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> pName, |
| double[] dYdP) |
| throws <a href="../../../../../org/apache/commons/math3/ode/UnknownParameterException.html" title="class in org.apache.commons.math3.ode">UnknownParameterException</a>, |
| <a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></pre> |
| <div class="block">Set the initial value of a column of the Jacobian matrix with respect to one parameter. |
| <p> |
| If this method is not called for some parameter, the initial value of |
| the column of the Jacobian matrix with respect to this parameter is set to zero. |
| </p></div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>pName</code> - parameter name</dd><dd><code>dYdP</code> - initial Jacobian column vector with respect to the parameter</dd> |
| <dt><span class="strong">Throws:</span></dt> |
| <dd><code><a href="../../../../../org/apache/commons/math3/ode/UnknownParameterException.html" title="class in org.apache.commons.math3.ode">UnknownParameterException</a></code> - if a parameter is not supported</dd> |
| <dd><code><a href="../../../../../org/apache/commons/math3/exception/DimensionMismatchException.html" title="class in org.apache.commons.math3.exception">DimensionMismatchException</a></code> - if the column vector does not match state dimension</dd></dl> |
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| </ul> |
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| <h4>getCurrentMainSetJacobian</h4> |
| <pre>public void getCurrentMainSetJacobian(double[][] dYdY0)</pre> |
| <div class="block">Get the current value of the Jacobian matrix with respect to state.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>dYdY0</code> - current Jacobian matrix with respect to state.</dd></dl> |
| </li> |
| </ul> |
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| <h4>getCurrentParameterJacobian</h4> |
| <pre>public void getCurrentParameterJacobian(<a href="http://docs.oracle.com/javase/6/docs/api/java/lang/String.html?is-external=true" title="class or interface in java.lang">String</a> pName, |
| double[] dYdP)</pre> |
| <div class="block">Get the current value of the Jacobian matrix with respect to one parameter.</div> |
| <dl><dt><span class="strong">Parameters:</span></dt><dd><code>pName</code> - name of the parameter for the computed Jacobian matrix</dd><dd><code>dYdP</code> - current Jacobian matrix with respect to the named parameter</dd></dl> |
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